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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
101
ChIP-seq
90
ATAC-seq
74
single cell RNA-seq
47
WGBS
6
MeRIP-seq
2
Capture-C
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
pCHi-C
Assay category
188
Transcription
101
DNA binding
91
DNA accessibility
47
DNA methylation
3D chromatin structure
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
24
control
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
32
February, 2021
25
May, 2021
19
September, 2020
15
November, 2019
14
October, 2019
7
August, 2020
6
November, 2020
5
March, 2020
5
September, 2017
3
August, 2018
2
August, 2021
2
October, 2018
1
June, 2018
Available data
260
bam
258
fastq
249
bigWig
142
tsv
91
bed narrowPeak
80
zippedFastqFolder
29
bigBed narrowPeak
3
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
436
Homo sapiens
Biosample type
tissue
344
primary cell
89
cell line
3
in vitro differentiated cells
Organ
500
epithelium
435
pancreas
427
liver
136
connective tissue
99
vasculature
93
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
20
vein
18
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
282
AMP
149
HPAP
5
T1D
Genome assembly (visualization)
248
GRCh38
240
hg19
Lab
280
AMP-T2D consortium
149
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
Audit category:
80
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
3D chromatin structure
assay_title!
CRISPR genome editing followed by sgRNA sequencing
biosample_type!
tissue
BIOSAMPLE
ASSAY
436 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
MeRIP-seq
Capture-C
DNase-seq
pCHi-C
primary cell
pancreatic alpha cell
52
13
35
12
31
pancreatic beta cell
21
13
23
12
16
pancreatic acinar cell
4
8
9
12
pancreatic ductal cell
4
13
4
10
pancreatic endocrine cell
23
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cell line
EndoC_BH1
33
15
19
6
2
Panc1
13
1
in vitro differentiated cells
pancreatic PP cell
3
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