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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
105
ChIP-seq
102
single cell RNA-seq
57
total RNA-seq
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
161
Transcription
131
DNA accessibility
105
DNA binding
11
DNA methylation
3D chromatin structure
Target of assay
76
histone
76
histone modification
39
narrow histone mark
37
broad histone mark
32
control
Date released
102
May, 2020
59
September, 2018
48
July, 2018
43
April, 2018
40
August, 2017
27
July, 2019
20
May, 2021
20
October, 2019
12
February, 2023
8
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
May, 2019
1
November, 2018
Available data
429
bam
384
bigWig
240
fastq
181
bed narrowPeak
168
tsv
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
409
Homo sapiens
Biosample type
1851
tissue
409
primary cell
319
in vitro differentiated cells
256
cell line
8
stem cell
Organ
189
epithelium
172
pancreas
22
connective tissue
20
kidney
12
vasculature
11
liver
10
blood vessel
7
brain
7
heart
7
vein
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
409
AMP
Genome assembly (visualization)
302
hg19
240
GRCh38
Lab
409
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
3D chromatin structure
assay_title!
CRISPR genome editing followed by sgRNA sequencing
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
409 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
13
12
10
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
10
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
pancreatic acinar cell
8
12
4
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