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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
ChIP-seq
42
ATAC-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
43
DNA accessibility
3D chromatin structure
Date released
84
May, 2021
26
February, 2021
21
August, 2021
15
February, 2018
12
February, 2023
6
October, 2019
5
November, 2019
4
March, 2020
1
August, 2017
Available data
145
bam
140
bigWig
127
tsv
22
bed narrowPeak
16
fastq
7
bed bedgraph
6
bed bed3+
5
bed bed3
3
bigBed narrowPeak
3
txt
2
bedpe bed3+
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
174
Homo sapiens
Biosample type
1203
tissue
366
primary cell
174
in vitro differentiated cells
60
cell line
Organ
25
connective tissue
6
embryo
2
epithelium
1
heart
Project
174
AMP
Genome assembly (visualization)
174
hg19
145
GRCh38
4
hg18
Lab
162
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
99
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
ChIP-seq
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
ATAC-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
10
adipocyte
4
8
1
1
induced pluripotent stem cell
9
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