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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
4
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
15
Transcription
8
DNA accessibility
6
DNA methylation
Date released
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
20
bigWig
19
bam
16
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
33
Homo sapiens
Biosample type
31
tissue
2
primary cell
1
in vitro differentiated cells
Organ
687
pancreas
355
epithelium
293
kidney
232
liver
196
heart
75
connective tissue
69
vasculature
66
blood vessel
65
brain
56
eye
51
musculature of body
47
artery
46
limb
32
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
1
T1D
Genome assembly (visualization)
21
hg19
20
GRCh38
Lab
33
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
ChIP-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
34 results
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total RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
omental fat pad
5
1
1
2
adipose tissue
1
3
3
1
subcutaneous adipose tissue
5
1
1
1
subcutaneous abdominal adipose tissue
3
thymus
2
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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