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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
29
DNA accessibility
7
DNA methylation
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
12
August, 2021
9
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
2
June, 2019
2
March, 2020
2
October, 2019
1
February, 2020
Available data
189
bigWig
174
tsv
171
bam
28
bed narrowPeak
12
fastq
6
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
csv
1
vcf
Organism
235
Homo sapiens
Biosample type
205
tissue
21
cell line
9
primary cell
Organ
719
pancreas
530
connective tissue
418
adipose tissue
387
epithelium
301
kidney
256
heart
235
liver
159
bone element
129
vasculature
126
blood vessel
107
artery
65
brain
56
eye
52
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
235
AMP
Genome assembly (visualization)
193
hg19
171
GRCh38
Lab
183
AMP-T2D consortium
40
Karen Mohlke, UNC
12
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
3D chromatin structure
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
right lobe of liver
3
1
2
1
2
cell line
HepG2
14
1
1
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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