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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
40
ChIP-seq
17
pCHi-C
10
RRBS
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
208
DNA accessibility
184
Transcription
58
DNA methylation
40
DNA binding
3D chromatin structure
Target of assay
39
histone
39
histone modification
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
September, 2020
54
May, 2021
46
February, 2021
9
July, 2019
8
January, 2021
6
October, 2019
2
August, 2017
1
November, 2018
1
September, 2018
Available data
163
fastq
153
zippedFastqFolder
81
bigWig
53
bam
32
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bigBed narrowPeak
2
csv
1
tar
Organism
507
Homo sapiens
Biosample type
717
tissue
507
primary cell
112
cell line
93
in vitro differentiated cells
7
stem cell
Organ
151
epithelium
139
pancreas
8
blood
8
bodily fluid
7
vasculature
6
blood vessel
6
vein
3
connective tissue
3
kidney
1
bone element
1
bone marrow
1
brain
1
eye
1
heart
1
liver
1
musculature of body
Project
311
HPAP
172
AMP
24
T1D
Genome assembly (visualization)
587
hg19
GRCh38
Lab
311
Klaus Kaestner, Upenn
140
AMP-T2D consortium
56
Kyle Gaulton, UCSD
Audit category:
27
audit script error
13
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
assembly!
GRCh38
target.investigated_as!
control
BIOSAMPLE
ASSAY
507 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
pancreatic beta cell
13
11
16
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
30
1
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