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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
787
ChIP-seq
DNase-seq
25
ATAC-seq
5
FAIRE-seq
Assay category
787
DNA binding
30
DNA accessibility
Target of assay
403
transcription factor
379
histone
379
histone modification
235
broad histone mark
144
narrow histone mark
91
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
97
May, 2019
64
April, 2019
64
November, 2018
60
October, 2019
45
October, 2018
38
August, 2017
36
December, 2017
30
December, 2018
23
June, 2019
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
Available data
2893
bam
2697
bigWig
1477
bed narrowPeak
1469
tsv
1205
fastq
817
bigBed narrowPeak
358
tagAlign
158
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
64
xls
39
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
8
csv
7
bed bed3
4
tar
1
tagAlign bed3+
1
vcf
Organism
811
Homo sapiens
Biosample type
384
tissue
353
cell line
80
primary cell
in vitro differentiated cells
Organ
339
liver
95
brain
83
pancreas
72
vasculature
70
blood vessel
64
heart
54
blood
54
bodily fluid
48
limb
45
epithelium
25
kidney
24
nerve
21
artery
17
connective tissue
14
musculature of body
12
spleen
11
vein
8
adipose tissue
2
eye
Project
817
AMP
Genome assembly (visualization)
777
GRCh38
761
hg19
Lab
817
AMP-T2D consortium
Audit category:
28
inconsistent control
20
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
817 results
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ChIP-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
heart left ventricle
28
body of pancreas
26
tibial nerve
24
kidney
18
1
+ See 29 more…
cell line
HepG2
293
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 12 more…
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