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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
57
DNA binding
23
DNA accessibility
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
23
June, 2019
17
August, 2017
14
September, 2018
11
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
Available data
580
bam
580
bigWig
408
fastq
270
tsv
266
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
bed bed3+
2
csv
1
bed bed3
1
tar
Organism
80
Homo sapiens
Biosample type
384
tissue
353
cell line
80
primary cell
16
in vitro differentiated cells
Organ
45
epithelium
22
pancreas
15
vasculature
13
blood vessel
11
vein
9
connective tissue
8
musculature of body
6
brain
6
kidney
3
heart
2
eye
Project
80
AMP
Genome assembly (visualization)
80
hg19
78
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
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