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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
823
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
823
DNA binding
292
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
564
histone modification
563
histone
297
narrow histone mark
266
broad histone mark
173
control
88
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
233
October, 2019
227
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
April, 2019
74
October, 2018
73
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
32
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1651
bam
1530
bigWig
1075
tsv
742
bed narrowPeak
367
fastq
320
bigBed narrowPeak
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2489
Homo sapiens
Biosample type
2498
tissue
1047
primary cell
656
cell line
389
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
494
pancreas
486
adipose tissue
356
liver
238
brain
226
heart
207
kidney
158
bone element
127
blood vessel
127
vasculature
82
limb
69
artery
53
eye
44
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2401
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1618
GRCh38
1518
hg19
Lab
2149
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
month_released!
April, 2019
organ_slims!
ovary
BIOSAMPLE
ASSAY
2498 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
67
68
6
7
4
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
kidney
49
4
75
64
6
1
1
bone element
84
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