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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
100
ChIP-seq
22
ATAC-seq
DNase-seq
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
100
DNA binding
22
DNA accessibility
4
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
34
August, 2021
25
August, 2017
9
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
2
March, 2020
1
February, 2020
Available data
676
bam
616
bigWig
fastq
436
bed narrowPeak
353
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
7
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
320
Homo sapiens
Biosample type
276
tissue
33
cell line
11
primary cell
Organ
575
connective tissue
461
pancreas
446
adipose tissue
360
heart
320
liver
272
kidney
240
epithelium
232
brain
214
vasculature
213
blood vessel
159
bone element
artery
82
limb
57
eye
55
musculature of body
41
nerve
20
lung
18
vein
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
320
AMP
Genome assembly (visualization)
230
hg19
186
GRCh38
Lab
250
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
files.file_type!
fastq
organ_slims!
artery
BIOSAMPLE
ASSAY
320 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
2
1
1
1
right lobe of liver
3
1
2
cell line
HepG2
9
18
1
2
2
1
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
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