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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
10
DNA methylation
3D chromatin structure
3
DNA accessibility
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
22
July, 2019
16
May, 2019
7
October, 2019
5
June, 2019
5
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
132
bigWig
113
tsv
110
bed narrowPeak
107
bam
61
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
Organism
250
Homo sapiens
Biosample type
241
tissue
8
primary cell
1
in vitro differentiated cells
Organ
929
pancreas
781
liver
674
connective tissue
497
epithelium
489
adipose tissue
360
heart
272
kidney
251
brain
220
vasculature
216
blood vessel
159
bone element
artery
82
limb
69
blood
69
bodily fluid
57
eye
57
musculature of body
41
nerve
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
250
AMP
Genome assembly (visualization)
131
GRCh38
88
hg19
Lab
210
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
organ_slims!
artery
embryo
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
2
1
1
left cardiac atrium
40
18
heart right ventricle
13
17
1
2
1
right cardiac atrium
6
18
1
1
heart
14
1
4
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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