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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
1
WGBS
Assay category
17
DNA binding
8
DNA accessibility
7
Transcription
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
22
October, 2019
6
February, 2021
3
February, 2020
1
July, 2019
1
May, 2019
Available data
30
bam
8
bed narrowPeak
7
bigWig
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
33
tissue
Organ
778
pancreas
678
liver
596
connective tissue
457
adipose tissue
404
epithelium
263
heart
242
kidney
159
bone element
149
vasculature
146
blood vessel
117
artery
68
blood
bodily fluid
64
brain
54
eye
33
limb
25
embryo
24
musculature of body
20
lung
18
spleen
17
nerve
16
skeleton
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
33
AMP-T2D consortium
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
organ_slims!
bodily fluid
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
muscle of leg
1
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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