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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
237
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
97
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
32
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
367
bam
353
bigWig
192
bed narrowPeak
174
tsv
149
fastq
109
bigBed narrowPeak
74
tagAlign
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
csv
1
vcf
Organism
470
Homo sapiens
Biosample type
360
tissue
82
cell line
15
in vitro differentiated cells
13
primary cell
Organ
937
pancreas
683
connective tissue
510
epithelium
491
adipose tissue
470
liver
390
heart
351
kidney
225
vasculature
222
blood vessel
192
brain
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
470
AMP
Genome assembly (visualization)
356
hg19
314
GRCh38
Lab
402
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
assay_slims!
3D chromatin structure
assay_title!
GRO-seq
STARR-seq
month_released!
November, 2017
BIOSAMPLE
ASSAY
470 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
63
14
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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