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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
25
transcription factor
22
histone
22
histone modification
chromatin remodeller
12
broad histone mark
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
11
December, 2017
6
August, 2017
2
February, 2018
Available data
34
bam
34
bigWig
34
fastq
32
bed narrowPeak
15
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
34
Homo sapiens
Biosample type
15
cell line
15
in vitro differentiated cells
2
stem cell
1
primary cell
1
tissue
Organ
16
liver
pancreas
5
epithelium
4
connective tissue
3
embryo
Project
34
AMP
Genome assembly (visualization)
34
hg19
31
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
34
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
assay_title!
MeRIP-seq
organ_slims!
pancreas
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
15
in vitro differentiated cells
adipocyte
4
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
tissue
liver
1
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