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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
94
ChIP-seq
23
ATAC-seq
17
pCHi-C
16
snATAC-seq
Assay category
110
Transcription
94
DNA binding
39
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
Available data
170
bigWig
164
bam
96
tsv
82
bed narrowPeak
44
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
260
Homo sapiens
Biosample type
189
primary cell
37
in vitro differentiated cells
34
tissue
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
173
T1D
87
AMP
Genome assembly (visualization)
188
hg19
140
GRCh38
Lab
3346
AMP-T2D consortium
260
Kyle Gaulton, UCSD
245
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
33
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
MeRIP-seq
month_released!
February, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
260 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
44
1
CD8-positive, alpha-beta T cell
4
23
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
27
5
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
See all biosamples
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