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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
25
DNA accessibility
4
DNA methylation
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
53
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
2
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
82
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
csv
Organism
359
Homo sapiens
Biosample type
399
cell line
359
tissue
15
in vitro differentiated cells
12
primary cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
359
liver
309
heart
297
kidney
264
brain
158
bone element
132
blood vessel
132
vasculature
118
limb
73
artery
72
musculature of body
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
359
AMP
Genome assembly (visualization)
266
hg19
238
GRCh38
Lab
319
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_slims!
3D chromatin structure
assay_title!
RRBS
month_released!
December, 2018
BIOSAMPLE
ASSAY
359 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
right lobe of liver
3
10
1
2
1
2
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