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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
FAIRE-seq
1
RRBS
WGBS
1
pCHi-C
Assay category
27
DNA binding
9
Transcription
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
22
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
13
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
November, 2017
1
July, 2019
1
March, 2020
Available data
28
bam
10
tsv
5
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
fastq
2
tagAlign
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
39
Homo sapiens
Biosample type
26
tissue
11
primary cell
2
cell line
Organ
256
pancreas
250
liver
175
epithelium
148
kidney
122
heart
113
connective tissue
93
bone element
66
brain
63
adipose tissue
55
eye
39
vasculature
37
blood vessel
37
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
GRCh38
160
hg19
Lab
39
AMP-T2D consortium
assay_slims!
3D chromatin structure
assay_title!
WGBS
assembly!
GRCh38
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
2
4
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
1
choroid plexus epithelial cell
1
1
brain microvascular endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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