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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
59
total RNA-seq
31
DNase-seq
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
185
DNA binding
183
DNA accessibility
163
Transcription
11
DNA methylation
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
57
August, 2017
55
May, 2021
51
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
12
February, 2023
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
November, 2018
Available data
419
bam
409
bigWig
235
fastq
201
bed narrowPeak
168
tsv
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
543
Homo sapiens
Biosample type
2543
tissue
543
primary cell
341
in vitro differentiated cells
285
cell line
8
stem cell
Organ
245
epithelium
194
pancreas
36
connective tissue
34
kidney
31
vasculature
26
blood vessel
20
vein
15
brain
14
musculature of body
13
liver
12
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
543
AMP
274
HPAP
204
T1D
Genome assembly (visualization)
429
hg19
336
GRCh38
Lab
508
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
assay_title!
WGBS
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
543 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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