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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
246
total RNA-seq
199
ATAC-seq
single cell RNA-seq
41
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
260
DNA accessibility
248
Transcription
52
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
55
June, 2019
February, 2021
33
October, 2019
24
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
2
October, 2018
Available data
507
bigWig
506
bam
294
bed narrowPeak
248
fastq
163
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
1
tar
Organism
855
Homo sapiens
Biosample type
2037
tissue
855
primary cell
562
cell line
357
in vitro differentiated cells
10
stem cell
Organ
323
epithelium
263
pancreas
36
kidney
33
vasculature
31
connective tissue
27
blood vessel
20
vein
15
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
448
AMP
204
T1D
203
HPAP
Genome assembly (visualization)
516
hg19
433
GRCh38
Lab
413
AMP-T2D consortium
239
Kyle Gaulton, UCSD
203
Klaus Kaestner, Upenn
Audit category:
47
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
assay_title!
single cell RNA-seq
files.file_type!
bed bed3
month_released!
February, 2021
BIOSAMPLE
ASSAY
855 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
25
pancreatic beta cell
13
21
23
16
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
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