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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
139
ChIP-seq
5
WGBS
3
pCHi-C
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
190
Transcription
139
DNA binding
7
DNA methylation
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
20
May, 2022
17
August, 2021
13
December, 2017
6
July, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
March, 2020
2
November, 2018
1
February, 2020
1
October, 2019
Available data
678
bam
618
bigWig
464
fastq
bed narrowPeak
358
bigBed narrowPeak
171
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
343
Homo sapiens
Biosample type
244
tissue
91
cell line
7
primary cell
1
in vitro differentiated cells
Organ
721
pancreas
605
connective tissue
475
adipose tissue
365
epithelium
343
liver
198
heart
169
kidney
151
bone element
98
vasculature
96
blood vessel
76
brain
67
artery
28
eye
28
musculature of body
26
limb
23
embryo
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
343
AMP
Genome assembly (visualization)
182
hg19
161
GRCh38
Lab
307
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_slims!
3D chromatin structure
assay_title!
small RNA-seq
files.file_type!
bed narrowPeak
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
343 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
3
1
1
1
right lobe of liver
3
3
1
1
cell line
HepG2
14
71
1
2
2
1
primary cell
hepatocyte
5
1
1
in vitro differentiated cells
hepatocyte
1
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