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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
4
July, 2019
1
January, 2018
1
March, 2020
1
May, 2022
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
fastq
Organism
83
Homo sapiens
Biosample type
70
tissue
13
primary cell
Organ
598
liver
529
pancreas
385
epithelium
318
heart
287
kidney
266
brain
209
connective tissue
170
vasculature
164
blood vessel
111
limb
97
bone element
93
adipose tissue
85
artery
83
musculature of body
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
20
vein
18
ureter
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
66
hg19
49
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
snATAC-seq
total RNA-seq
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
DNase-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
forelimb muscle
1
hindlimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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