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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
4
ATAC-seq
2
Capture-C
2
total RNA-seq
snATAC-seq
Assay category
22
DNA binding
3D chromatin structure
4
DNA accessibility
2
Transcription
Target of assay
10
transcription factor
9
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
15
August, 2017
5
December, 2017
4
February, 2023
2
August, 2021
February, 2021
2
May, 2021
2
September, 2017
Available data
2820
bam
2613
bigWig
bed narrowPeak
1312
fastq
1042
bigBed narrowPeak
1041
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
265
bed bed3+
132
zippedFastqFolder
71
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
10
bed bed3
4
tar
3
bed bedgraph
3
bedpe bed3+
2
csv
2
ibed
1
tagAlign bed3+
1
vcf
Organism
30
Homo sapiens
Biosample type
16
tissue
11
in vitro differentiated cells
2
primary cell
1
stem cell
Organ
11
connective tissue
11
pancreas
4
adipose tissue
1
embryo
1
liver
Project
30
AMP
Genome assembly (visualization)
30
hg19
22
GRCh38
Lab
26
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
13
missing controlled_by
assay_slims!
3D chromatin structure
assay_title!
snATAC-seq
files.file_type!
bed narrowPeak
month_released!
February, 2021
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
total RNA-seq
tissue
islet of Langerhans
11
white adipose tissue
4
liver
1
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
primary cell
CD8-positive, alpha-beta T cell
2
stem cell
hESC
1
See all biosamples
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