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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
32
DNase-seq
8
WGBS
3
pCHi-C
2
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
151
DNA binding
94
Transcription
80
DNA accessibility
10
DNA methylation
3D chromatin structure
Target of assay
112
histone
112
histone modification
66
broad histone mark
46
narrow histone mark
22
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
25
October, 2019
21
May, 2019
15
July, 2019
14
February, 2021
3
March, 2020
Available data
204
bed narrowPeak
170
bigWig
162
bam
107
bigBed narrowPeak
96
tsv
34
bed broadPeak
34
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
1
tar
Organism
338
Homo sapiens
Biosample type
295
tissue
29
primary cell
14
cell line
Organ
571
liver
540
pancreas
385
epithelium
318
heart
293
kidney
266
brain
209
connective tissue
170
vasculature
164
blood vessel
111
limb
97
bone element
93
adipose tissue
85
artery
84
musculature of body
68
blood
68
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
20
lung
20
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
338
AMP
Genome assembly (visualization)
209
GRCh38
131
hg19
Lab
298
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
338 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
RRBS
FAIRE-seq
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
heart
14
1
18
1
1
heart right ventricle
13
17
1
2
1
+ See 9 more…
primary cell
endothelial cell of umbilical vein
17
2
1
cardiac fibroblast
5
3
1
cell line
smooth muscle cell of the coronary artery
6
8
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