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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
total RNA-seq
199
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
287
DNA accessibility
279
DNA binding
186
Transcription
58
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
September, 2018
46
February, 2021
43
April, 2018
43
September, 2020
31
October, 2019
14
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
2
November, 2020
1
November, 2018
Available data
456
bam
454
bigWig
295
bed narrowPeak
286
fastq
153
zippedFastqFolder
117
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
bed bed3
1
tar
Organism
827
Homo sapiens
Biosample type
1725
tissue
827
primary cell
544
cell line
248
in vitro differentiated cells
10
stem cell
Organ
303
epithelium
259
pancreas
31
vasculature
30
kidney
27
connective tissue
25
blood vessel
20
vein
18
brain
13
musculature of body
9
heart
8
blood
8
bodily fluid
8
liver
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
490
AMP
229
HPAP
108
T1D
Genome assembly (visualization)
463
hg19
381
GRCh38
Lab
457
AMP-T2D consortium
229
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
Audit category:
50
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
assay_title!
total RNA-seq
files.file_type!
bed bed3
month_released!
August, 2018
BIOSAMPLE
ASSAY
827 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
10
31
pancreatic beta cell
13
23
12
16
CD8-positive, alpha-beta T cell
33
2
1
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