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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
907
DNA binding
470
DNA accessibility
196
Transcription
38
DNA methylation
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
219
October, 2019
195
August, 2017
177
August, 2021
163
June, 2019
115
May, 2019
101
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
42
July, 2019
40
May, 2022
40
May, 2024
26
November, 2018
24
March, 2020
23
October, 2017
20
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
1006
bam
984
bed narrowPeak
877
bigWig
561
bigBed narrowPeak
280
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1721
Homo sapiens
Biosample type
1730
tissue
824
primary cell
545
cell line
254
in vitro differentiated cells
10
stem cell
Organ
295
heart
248
brain
248
kidney
218
pancreas
190
liver
125
blood vessel
125
vasculature
111
limb
96
bone element
92
connective tissue
91
adipose tissue
71
artery
71
musculature of body
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1640
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
963
GRCh38
848
hg19
Lab
1463
AMP-T2D consortium
92
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
assay_title!
total RNA-seq
month_released!
August, 2020
BIOSAMPLE
ASSAY
1730 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
64
13
6
1
1
liver
145
20
1
2
3
1
1
1
islet of Langerhans
71
68
6
1
7
4
1
1
4
bone element
84
heart left ventricle
35
2
18
3
4
1
1
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