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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RRBS
Assay category
22
DNA binding
3D chromatin structure
2
DNA accessibility
1
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
7
October, 2017
3
October, 2019
2
March, 2020
1
February, 2023
1
July, 2019
Available data
bam
206
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bigBed broadPeak
30
bed bed3+
15
fastq
9
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
27
Homo sapiens
Biosample type
27
tissue
Organ
181
pancreas
176
heart
160
kidney
144
epithelium
89
bone element
83
connective tissue
76
liver
46
adipose tissue
vasculature
42
blood vessel
37
artery
35
eye
31
musculature of body
28
brain
20
lung
9
blood
9
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
limb
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
assay_title!
total RNA-seq
files.file_type!
bam
organ_slims!
vasculature
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
ATAC-seq
pCHi-C
RRBS
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
Ammon's horn
1
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