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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
total RNA-seq
1
WGBS
Assay category
66
DNA binding
44
DNA accessibility
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
1
July, 2019
Available data
110
bam
92
bed narrowPeak
87
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
111
Homo sapiens
Biosample type
111
tissue
Organ
597
liver
532
pancreas
382
epithelium
315
heart
291
kidney
264
brain
207
connective tissue
169
vasculature
163
blood vessel
111
limb
97
bone element
92
adipose tissue
85
artery
83
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
24
spleen
23
embryo
20
vein
19
lung
18
ureter
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
111
AMP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
111
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
total RNA-seq
files.file_type!
bedpe
month_released!
March, 2020
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
distal epiphysis of femur
1
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