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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
4
July, 2019
2
May, 2022
1
January, 2018
1
March, 2020
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
fastq
1
txt
Organism
84
Homo sapiens
Biosample type
71
tissue
13
primary cell
Organ
592
liver
523
pancreas
354
epithelium
313
heart
269
kidney
205
connective tissue
181
brain
124
vasculature
118
blood vessel
97
bone element
92
adipose tissue
84
musculature of body
69
blood
69
bodily fluid
59
artery
46
limb
35
eye
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
67
hg19
49
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
assay_title!
total RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
DNase-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
forelimb muscle
1
hindlimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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