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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
1
RNA microarray
whole genome sequencing assay
Assay category
165
Transcription
80
DNA accessibility
13
DNA binding
3D chromatin structure
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
268
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
103
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
34
March, 2020
29
October, 2018
28
November, 2019
25
February, 2020
23
May, 2019
22
December, 2017
19
April, 2020
19
July, 2019
16
January, 2021
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2019
4
December, 2018
4
January, 2019
4
July, 2018
4
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
bigWig
24
tagAlign
5
bed bed3+
Organism
267
Homo sapiens
Biosample type
227
tissue
20
cell line
20
in vitro differentiated cells
1
primary cell
Organ
129
kidney
92
heart
16
liver
6
blood vessel
6
vasculature
3
connective tissue
3
epithelium
3
pancreas
2
artery
1
adipose tissue
Project
268
AMP
Genome assembly (visualization)
74
GRCh38
12
hg19
Lab
127
Katalin Susztak, Upenn
120
AMP-T2D consortium
19
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
whole genome sequencing assay
files.file_type!
bigWig
month_released!
April, 2019
BIOSAMPLE
ASSAY
268 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
RNA microarray
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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