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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1706
ChIP-seq
1345
total RNA-seq
497
ATAC-seq
360
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
74
snATAC-seq
40
pCHi-C
21
RRBS
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
Organism
10
Homo sapiens
Biosample type
6
cell line
4
tissue
Organ
10
pancreas
6
epithelium
Project
10
AMP
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
small RNA-seq
lab.title!
Xin Sun, UCSD
month_released!
May, 2021
BIOSAMPLE
ASSAY
10 results
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MeRIP-seq
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4