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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1453
total RNA-seq
1325
ChIP-seq
455
ATAC-seq
263
single cell RNA-seq
212
DNase-seq
86
RNA microarray
78
snATAC-seq
75
WGBS
57
pCHi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
263
Transcription
Target of assay
3
control
Date released
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
134
fastq
113
tsv
106
bam
106
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
263
Homo sapiens
Biosample type
187
primary cell
74
tissue
2
in vitro differentiated cells
Organ
80
pancreas
70
epithelium
56
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
122
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
119
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
7
audit script error
assay_slims!
3D chromatin structure
month_released!
August, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
263 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
56
lung
9
islet of Langerhans
6
heart
1
liver
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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