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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1808
ChIP-seq
1527
total RNA-seq
530
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
68
snATAC-seq
57
pCHi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
67
Homo sapiens
Biosample type
48
primary cell
20
tissue
Organ
10
lung
6
kidney
3
pancreas
1
musculature of body
Project
48
HPAP
10
LungMap
8
AMP
2
T1D
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
29
audit script error
assay_slims!
3D chromatin structure
files.file_type!
tar
month_released!
January, 2021
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
68 results
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Clear Filters
snATAC-seq
primary cell
Langerhans cell
48
tissue
lung
10
kidney
6
islet of Langerhans
3
skeletal muscle tissue
1
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