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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
492
ATAC-seq
317
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
47
snATAC-seq
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
47
DNA accessibility
Date released
27
February, 2021
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
27
fastq
zippedFastqFolder
1
bed bed3+
1
txt
Organism
46
Homo sapiens
Biosample type
27
primary cell
20
tissue
Organ
10
lung
6
kidney
3
pancreas
1
musculature of body
Project
27
HPAP
10
LungMap
8
AMP
2
T1D
Genome assembly (visualization)
1
hg19
Lab
27
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
29
audit script error
assay_slims!
3D chromatin structure
files.file_type!
zippedFastqFolder
month_released!
January, 2021
BIOSAMPLE
ASSAY
47 results
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snATAC-seq
primary cell
Langerhans cell
27
tissue
lung
10
kidney
6
islet of Langerhans
3
skeletal muscle tissue
1
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