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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
81
total RNA-seq
72
ChIP-seq
56
snATAC-seq
47
WGBS
47
single cell RNA-seq
17
pCHi-C
10
RRBS
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
212
DNA accessibility
128
Transcription
72
DNA binding
58
DNA methylation
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
57
May, 2021
September, 2020
46
February, 2021
17
August, 2017
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
November, 2017
1
August, 2021
1
May, 2019
1
November, 2018
1
September, 2018
Available data
142
fastq
134
zippedFastqFolder
90
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
3
bed bed3+
2
csv
2
tagAlign
1
tar
Organism
487
Homo sapiens
Biosample type
902
tissue
487
primary cell
cell line
125
in vitro differentiated cells
7
stem cell
Organ
158
epithelium
135
pancreas
11
vasculature
9
blood vessel
8
blood
8
bodily fluid
8
kidney
8
vein
6
connective tissue
4
brain
3
heart
3
musculature of body
2
eye
2
liver
1
bone element
1
bone marrow
Project
255
HPAP
208
AMP
24
T1D
Genome assembly (visualization)
619
hg19
GRCh38
Lab
255
Klaus Kaestner, Upenn
173
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
27
audit script error
18
inconsistent ontology term
assay_slims!
3D chromatin structure
assembly!
GRCh38
biosample_type!
cell line
month_released!
September, 2020
BIOSAMPLE
ASSAY
487 results
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ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
single cell RNA-seq
pCHi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
48
45
pancreatic alpha cell
22
27
6
31
pancreatic beta cell
13
10
6
16
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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