Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
94
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
ChIP-seq
10
RRBS
4
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
212
DNA accessibility
181
Transcription
57
DNA methylation
30
DNA binding
3D chromatin structure
Target of assay
29
control
5
histone
histone modification
4
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
September, 2020
46
February, 2021
May, 2021
17
August, 2017
9
July, 2019
8
January, 2021
8
June, 2019
6
October, 2019
3
November, 2017
1
August, 2021
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
79
bam
53
bigWig
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
bed narrowPeak
4
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
csv
2
tagAlign
1
bed bed3+
1
tar
Organism
481
Homo sapiens
Biosample type
766
tissue
481
primary cell
173
cell line
63
in vitro differentiated cells
7
stem cell
Organ
169
epithelium
151
pancreas
8
blood
8
bodily fluid
8
kidney
6
vasculature
5
connective tissue
4
blood vessel
4
brain
3
heart
3
musculature of body
3
vein
2
eye
2
liver
Project
311
HPAP
162
AMP
8
T1D
Genome assembly (visualization)
319
hg19
GRCh38
Lab
311
Klaus Kaestner, Upenn
162
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
17
inconsistent ontology term
assay_slims!
3D chromatin structure
assembly!
GRCh38
month_released!
May, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
481 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
RRBS
DNase-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
pancreatic beta cell
13
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
+ See 53 more…
See all biosamples
Download