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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
165
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
25
pCHi-C
18
snATAC-seq
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
300
Transcription
125
DNA accessibility
22
DNA methylation
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
163
August, 2021
126
August, 2017
93
February, 2021
80
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
24
March, 2020
23
May, 2019
16
April, 2019
12
December, 2017
12
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
2
January, 2018
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
204
bam
159
tsv
157
txt
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
Organism
881
Homo sapiens
Biosample type
883
tissue
543
primary cell
195
cell line
125
in vitro differentiated cells
7
stem cell
Organ
133
kidney
122
liver
119
heart
115
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
34
musculature of body
27
blood vessel
27
vasculature
22
limb
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
807
AMP
47
KPMP
29
T1D
Genome assembly (visualization)
GRCh38
1743
hg19
Lab
671
AMP-T2D consortium
66
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
assembly!
GRCh38
lab.title!
Stephen Parker, UMich
Xin Sun, UCSD
BIOSAMPLE
ASSAY
883 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
4
7
1
1
4
kidney
7
64
49
6
1
1
liver
70
1
20
20
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
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