Experiment Matrix

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BIOSAMPLE

	ASSAY
1772 results Clear Filters	ChIP-seq	ATAC-seq	single cell RNA-seq	total RNA-seq	RNA microarray	snATAC-seq	WGBS	pCHi-C	RRBS	MeRIP-seq	DNase-seq	FAIRE-seq	GRO-seq	STARR-seq	Capture-C	CRISPR genome editing followed by DNA sequencing	snDrop-seq	HiChIP	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	...and 6 more
tissue
islet of Langerhans	46	46		32		7		4	1	4		1
kidney	7		64	49		6			1			1
liver	70	20	1	20			3	1	1
bone element					84
subcutaneous abdominal adipose tissue	36						3
heart left ventricle	7		18				2	1	1
skeletal muscle tissue	22	1	1			1			4
heart right ventricle	2		17					1
lung			9			10		1
right cardiac atrium	1		18					1
left cardiac atrium			18
retina		15		3
pigmented layer of retina		12		2
subcutaneous adipose tissue	10			1	1
tibial nerve	11			1
brain	9	1							1
pancreas	3			1		4		1	1			1
body of pancreas	9			1
omental fat pad	8			1
spleen	8							1
aorta	2		4				1	1
cingulate gyrus	8
adipose tissue	1	3					1	1
layer of hippocampus	6
right lobe of liver	3			1			1				1
tibial artery	5			1
substantia nigra	4			1
aortic valve			4
ascending aorta	3			1
caudate nucleus	3			1
pulmonary valve			4
right atrium auricular region	3			1
thoracic aorta	4
tricuspid valve			4
cerebellum (Hemisphere)	2			1
coronary artery	2			1
heart	2		1
middle frontal area 46	3
mitral valve			3
Ammon's horn				1				1
acetabular part of hip bone		1		1
cardiac atrium			2
cardiac ventricle			2
endocrine pancreas	2
frontal cortex				1								1
germinal matrix	2
ilium		1		1
interventricular septum			2
ischium		1		1
muscle of leg	2
pubis		1		1
pulmonary artery			2
putamen	1			1
temporal lobe	2
thymus								2
C1 segment of cervical spinal cord				1
adrenal gland								1
amygdala				1
angular gyrus	1
anterior cingulate cortex				1
bladder (urinary bladder)								1
central medial thalamic nucleus	1
cerebellum				1
dorsolateral prefrontal cortex								1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))				1
esophagus								1
gastric (mucosa of stomach)								1
gastrocnemius medialis				1
gyrus rectus	1
hypothalamus				1
kidney (Cortex-Medulla)																	1
kidney (cortex)																	1
kidney (medulla)																	1
kidney interstitium					1
left ventricle myocardium				1
medial globus pallidus	1
nucleus accumbens				1
occipital pole	1
ovary								1
pericardium									1
primary motor cortex	1
psoas muscle								1
renal glomerulus					1
secondary auditory cortex	1
sigmoid colon								1
small intestine								1
white matter	1
primary cell
Langerhans cell			85			48
pancreatic alpha cell	6	22		42			31
pancreatic beta cell	6	13		11			16
exocrine cell				39
CD8-positive, alpha-beta T cell	33	2		2				1
naive thymus-derived CD4-positive, alpha-beta T cell	2	22		1				1
CD4-positive, alpha-beta memory T cell		22
macrophage		11						1
endothelial cell of umbilical vein	7											1
peripheral blood mononuclear cell						8
monocyte	1	2		1				1
skeletal muscle myoblast	2								1		2
pancreatic acinar cell		4
B cell		2						1
cardiac fibroblast	2								1
epithelial cell of proximal tubule	2								1
gabaergic neuron		3
glutamatergic neuron		3
microglial cell/astrocyte		3
naive B cel		2						1
naive thymus-derived CD8-positive, alpha-beta T cell		2						1
neutrophil	1			1				1
oligodendrocyte		3
CD4-positive, alpha-beta T cell								2
T follicular helper cell		2
T-helper 1 cell		2
T-helper 17 cell		2
T-helper 2 cell		2
cardiac muscle cell	1								1
central memory CD8-positive, alpha-beta T cell		2
choroid plexus epithelial cell	1								1
effector CD4-positive, alpha-beta T cell		2
effector T cell		2
effector memory CD8-positive, alpha-beta T cell		2
gamma-delta T cell		2
hepatocyte	1								1
kidney epithelial cell	1								1
mature natural killer cell		2
memory B cell		2
memory T cell		2
memory regulatory T cell		2
naive regulatory T cell		2
pancreatic cell			2
regulatory T cell		2
retinal pigment epithelial cell	1								1
skeletal muscle cell	1								1
activated CD4-positive, alpha-beta T cell								1
adult endothelial progenitor cell								1
alternatively activated macrophage								1
astrocyte of the cerebellum	1
brain microvascular endothelial cell	1
erythroblast								1
immature natural killer cell		1
inflammatory macrophage								1
kidney glomerular epithelial cell											1
kidney tubule cell											1
megakaryocyte								1
mesenchymal stem cell	1
myeloid dendritic cell		1
natural killer cell		1
osteoblast								1
plasma cell		1
plasmacytoid dendritic cell		1
renal cortical epithelial cell									1
skeletal muscle satellite cell	1
cell line
HepG2	117			9				2						2
EndoC_BH1	2	18								6					2	3		2		1
GM12878	6	1
Panc1	7
EndoC-BH1
HEK293T														2
RCC 7860 vector	1							1
smooth muscle cell of the coronary artery	2
MCF-7								1
MIN6
RCC 7860 HIF1a re-expression	1
RCC 7860 HIF2a over-expression	1
RCC 7860 VHL								1
Synthesized DNA														1
fibroblast cell line								1
iPSC derived cell line	1
in vitro differentiated cells
embryonic stem cell	38	6		5				1
adipocyte	19	8		1											1
neural progenitor cell	8
pancreatic endoderm	5												1
chondrocyte		5
cardiomyocytes (cardiac muscle cell)			2					2
immature adipocyte		2		2
Hepatic endoderm	2
definitive endodermal cell	1												1
osteoblast		1													1
preadipocyte		1		1
primitive gut cell	1												1
Posterior foregut													1
Progenitor cell of Hypothalamus (neural progenitor cell)		1
endocrine cell	1
hepatocyte	1
lymphocyte of B lineage (iPSC)								1
neuron cell of Hypothalamus (neuron)		1
pancreatic PP cell	1
posterior foregut	1
white fat cell								1
stem cell
SB Ad3.1																			1
hESC													1
mesenchymal stem cell								1
mesendoderm								1
neural progenitor cell (neural stem cell)								1
trophoblast								1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

Audit category:

assay_slims!

assembly!

1772 results