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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
6
WGBS
4
total RNA-seq
3
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
75
DNA binding
6
DNA methylation
4
Transcription
1
DNA accessibility
Target of assay
43
histone
43
histone modification
32
control
28
broad histone mark
15
narrow histone mark
Date released
61
August, 2017
18
October, 2018
2
February, 2020
2
February, 2023
2
June, 2019
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2021
1
October, 2019
Available data
28
bam
28
fastq
21
tagAlign
3
bigWig
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
89
Homo sapiens
Biosample type
65
tissue
22
in vitro differentiated cells
3
primary cell
Organ
261
pancreas
218
kidney
204
heart
183
epithelium
165
liver
121
brain
90
connective tissue
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
22
limb
20
lung
18
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
6
embryo
5
bone element
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
89
AMP
1
T1D
Genome assembly (visualization)
hg19
555
GRCh38
Lab
89
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
assay_slims!
3D chromatin structure
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
WGBS
total RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
islet of Langerhans
1
in vitro differentiated cells
adipocyte
19
1
preadipocyte
1
white fat cell
1
primary cell
cardiac fibroblast
1
1
adult endothelial progenitor cell
1
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