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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
168
single cell RNA-seq
132
total RNA-seq
103
ATAC-seq
87
RNA microarray
27
snATAC-seq
25
WGBS
24
pCHi-C
17
DNase-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
358
DNA binding
300
Transcription
147
DNA accessibility
27
DNA methylation
3D chromatin structure
Target of assay
190
histone
190
histone modification
164
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
221
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
74
October, 2019
47
September, 2023
40
May, 2024
29
October, 2018
27
February, 2023
27
May, 2022
23
May, 2020
22
February, 2020
21
March, 2020
19
April, 2020
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
11
July, 2019
11
May, 2019
10
October, 2017
9
November, 2018
8
January, 2021
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
237
bam
172
bed narrowPeak
156
txt
148
tsv
133
tagAlign
124
bigWig
79
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
6
csv
Organism
947
Homo sapiens
Biosample type
950
tissue
453
primary cell
129
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
200
heart
122
brain
93
liver
91
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
vasculature
46
artery
26
eye
22
limb
20
lung
17
musculature of body
12
nerve
7
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
855
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1751
GRCh38
hg19
Lab
642
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
assembly!
hg19
month_released!
December, 2018
organ_slims!
vasculature
BIOSAMPLE
ASSAY
950 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
49
75
6
islet of Langerhans
40
32
26
7
4
4
liver
62
1
20
3
1
bone element
84
left cardiac atrium
40
18
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