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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
Assay category
113
Transcription
81
DNA accessibility
7
DNA binding
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
127
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
5
April, 2019
3
December, 2019
2
October, 2019
June, 2019
Available data
64
bed narrowPeak
64
xls
62
txt
10
tsv
7
bam
5
csv
Organism
206
Homo sapiens
Biosample type
206
tissue
7
cell line
4
primary cell
Organ
206
kidney
198
heart
112
brain
93
liver
89
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
22
limb
20
lung
17
musculature of body
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
159
AMP
47
KPMP
Genome assembly (visualization)
97
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
18
AMP-T2D consortium
Audit category:
7
audit script error
assay_slims!
3D chromatin structure
assembly!
hg19
month_released!
June, 2019
BIOSAMPLE
ASSAY
206 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
tissue
kidney
75
64
49
7
6
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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