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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
168
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
165
histone
165
histone modification
106
narrow histone mark
59
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
4
October, 2017
2
November, 2018
Available data
212
bam
211
bigWig
198
bed narrowPeak
123
bigBed narrowPeak
79
tagAlign
44
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
12
fastq
12
tsv
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
200
tissue
14
primary cell
Organ
580
pancreas
549
connective tissue
526
liver
412
adipose tissue
273
epithelium
266
heart
214
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
214
GRCh38
158
hg19
Lab
214
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
assay_slims!
3D chromatin structure
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
8
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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