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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
96
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
346
DNA binding
96
Transcription
12
DNA accessibility
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
19
October, 2019
13
November, 2019
5
March, 2020
5
May, 2021
Available data
455
bam
445
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
96
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
455
Homo sapiens
Biosample type
1859
tissue
535
primary cell
455
cell line
244
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
54
pancreas
49
epithelium
12
kidney
embryo
Project
451
AMP
4
T1D
Genome assembly (visualization)
519
hg19
455
GRCh38
Lab
455
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
assay_slims!
3D chromatin structure
organ_slims!
embryo
BIOSAMPLE
ASSAY
455 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
Panc1
6
1
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