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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
104
total RNA-seq
13
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
394
DNA binding
104
Transcription
15
DNA accessibility
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
control
2
other context
2
other post-translational modification
Date released
253
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
19
October, 2019
13
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
503
bigWig
496
bam
400
bed narrowPeak
354
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
3
tar
2
bed bed3+
1
bed bed3
Organism
514
Homo sapiens
Biosample type
1741
tissue
609
primary cell
514
cell line
286
in vitro differentiated cells
2
stem cell
Organ
316
liver
64
artery
64
blood vessel
64
heart
64
vasculature
56
pancreas
55
blood
55
bodily fluid
51
epithelium
12
kidney
8
embryo
Project
510
AMP
4
T1D
Genome assembly (visualization)
514
hg19
463
GRCh38
Lab
500
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
59
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
3D chromatin structure
files.file_type!
ibed
target.investigated_as!
control
BIOSAMPLE
ASSAY
514 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
cell line
HepG2
309
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
H1-hESC
8
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