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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
45
ATAC-seq
9
RRBS
3
single cell RNA-seq
2
small RNA-seq
Assay category
63
Transcription
45
DNA accessibility
9
DNA methylation
3D chromatin structure
Target of assay
3
control
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
40
June, 2019
27
July, 2019
25
October, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
Available data
108
bam
108
bigWig
63
tsv
9
bed bedMethyl
9
bigBed bedMethyl
Organism
117
Homo sapiens
Biosample type
230
tissue
117
primary cell
Organ
11
epithelium
7
connective tissue
7
kidney
5
heart
4
brain
3
musculature of body
3
vasculature
2
adipose tissue
2
artery
2
blood vessel
1
eye
1
liver
1
pericardium
Project
72
AMP
45
T1D
Genome assembly (visualization)
117
hg19
63
GRCh38
Lab
72
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
117 results
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total RNA-seq
ATAC-seq
RRBS
single cell RNA-seq
small RNA-seq
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
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