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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
884
total RNA-seq
462
ChIP-seq
136
DNase-seq
85
ATAC-seq
15
small RNA-seq
8
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
905
Transcription
462
DNA binding
226
DNA accessibility
3D chromatin structure
8
DNA methylation
Target of assay
378
histone modification
377
histone
216
narrow histone mark
161
broad histone mark
81
transcription factor
17
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
155
October, 2019
122
June, 2019
116
July, 2018
78
May, 2019
48
July, 2019
45
October, 2018
39
May, 2022
39
November, 2019
36
December, 2017
36
May, 2021
February, 2023
18
April, 2019
17
November, 2018
13
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
2
January, 2018
2
March, 2019
2
September, 2017
1
May, 2023
Available data
1540
bam
1538
bigWig
905
tsv
653
bed narrowPeak
407
bigBed narrowPeak
294
fastq
171
bed broadPeak
164
bed bed3+
135
bigBed broadPeak
105
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
1
tagAlign bed3+
1
txt
Organism
1595
Homo sapiens
Biosample type
1601
tissue
609
primary cell
463
cell line
280
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
410
pancreas
267
liver
142
brain
heart
96
limb
91
kidney
69
blood vessel
69
vasculature
66
bone element
59
musculature of body
31
nerve
27
artery
18
ureter
14
spleen
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1599
AMP
2
T1D
Genome assembly (visualization)
1668
GRCh38
1601
hg19
Lab
1560
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
month_released!
February, 2023
organ_slims!
heart
BIOSAMPLE
ASSAY
1601 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
31
1
42
1
6
1
liver
147
83
2
20
1
1
bone tissue
58
body of pancreas
2
26
2
4
2
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