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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
170
DNA binding
89
Transcription
10
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
control
Date released
574
February, 2021
313
May, 2021
273
August, 2017
260
May, 2020
205
October, 2019
200
November, 2017
187
June, 2019
164
July, 2018
97
May, 2019
84
July, 2019
72
December, 2017
72
September, 2018
65
April, 2019
58
August, 2021
58
November, 2018
57
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
31
February, 2018
30
December, 2018
26
January, 2019
22
March, 2020
13
October, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
January, 2018
3
June, 2018
2
March, 2019
1
May, 2023
Available data
269
bigWig
252
fastq
249
bam
142
bed narrowPeak
89
tsv
42
bigBed narrowPeak
41
bed broadPeak
37
tagAlign
31
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
267
Homo sapiens
Biosample type
179
tissue
48
in vitro differentiated cells
46
primary cell
Organ
159
pancreas
63
connective tissue
19
liver
17
epithelium
15
adipose tissue
15
musculature of body
Project
273
AMP
Genome assembly (visualization)
273
hg19
247
GRCh38
Lab
273
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
target.investigated_as!
control
recombinant protein
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
14
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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