Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
3
GRO-seq
2
Capture-C
1
DNase-seq
Assay category
176
DNA binding
130
Transcription
43
DNA accessibility
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
130
May, 2021
68
August, 2017
42
August, 2021
30
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
3
January, 2018
1
August, 2018
Available data
263
bam
238
bigWig
123
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
359
Homo sapiens
Biosample type
2752
tissue
1043
primary cell
589
cell line
359
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
359
AMP
Genome assembly (visualization)
272
hg19
244
GRCh38
3
hg18
Lab
305
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
assay_slims!
3D chromatin structure
audit.ERROR.category!
audit script error
organ_slims!
bodily fluid
embryo
BIOSAMPLE
ASSAY
359 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
+ See 27 more…
See all biosamples
Download