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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
216
DNA binding
37
DNA accessibility
23
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
11
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
241
bam
217
bigWig
201
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
281
Homo sapiens
Biosample type
263
tissue
18
primary cell
Organ
857
pancreas
759
liver
664
connective tissue
490
adipose tissue
426
epithelium
384
heart
330
kidney
280
brain
230
vasculature
225
blood vessel
141
artery
117
limb
81
musculature of body
75
bone element
68
blood
68
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
281
AMP
Genome assembly (visualization)
215
GRCh38
159
hg19
Lab
281
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
3D chromatin structure
audit.ERROR.category!
inconsistent control
inconsistent ontology term
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 76 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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