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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
713
ChIP-seq
320
total RNA-seq
198
ATAC-seq
178
single cell RNA-seq
56
snATAC-seq
48
WGBS
30
DNase-seq
20
pCHi-C
8
RRBS
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
713
DNA binding
502
Transcription
285
DNA accessibility
57
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
360
transcription factor
246
histone
246
histone modification
127
broad histone mark
119
narrow histone mark
105
control
82
recombinant protein
71
RNA binding protein
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
324
November, 2017
205
May, 2021
140
May, 2020
134
May, 2022
118
February, 2021
88
February, 2023
73
September, 2018
62
November, 2018
59
August, 2017
59
September, 2020
47
October, 2019
44
August, 2021
43
April, 2018
42
July, 2018
30
June, 2019
27
December, 2018
25
July, 2019
23
January, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
March, 2020
3
August, 2018
June, 2018
2
March, 2023
2
May, 2019
2
October, 2018
1
January, 2018
1
October, 2022
Available data
1082
bam
1032
bigWig
826
fastq
653
bed narrowPeak
441
bigBed narrowPeak
331
tsv
153
zippedFastqFolder
120
tagAlign
105
bed broadPeak
105
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
tar
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1585
Homo sapiens
Biosample type
2670
tissue
1022
primary cell
567
cell line
279
in vitro differentiated cells
9
stem cell
Organ
411
liver
391
epithelium
352
pancreas
98
vasculature
93
blood vessel
73
heart
69
blood
69
bodily fluid
68
artery
32
kidney
25
connective tissue
20
vein
18
brain
8
embryo
6
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1062
AMP
321
HPAP
204
T1D
2
community
Genome assembly (visualization)
1043
hg19
903
GRCh38
Lab
995
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
32
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
27
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_slims!
3D chromatin structure
audit.ERROR.category!
inconsistent ontology term
month_released!
June, 2018
BIOSAMPLE
ASSAY
1589 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 81 more…
cell line
HepG2
378
14
1
1
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
H1-hESC
8
+ See 9 more…
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