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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
150
total RNA-seq
117
ATAC-seq
111
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
11
DNase-seq
3
RRBS
2
small RNA-seq
1
DNAme array
Assay category
263
Transcription
184
DNA accessibility
168
DNA binding
4
DNA methylation
3D chromatin structure
Target of assay
156
histone
156
histone modification
83
broad histone mark
73
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
54
May, 2022
45
February, 2023
42
February, 2021
40
September, 2020
30
August, 2017
15
July, 2019
14
June, 2019
12
September, 2018
10
April, 2018
10
July, 2018
8
January, 2021
6
November, 2020
3
November, 2017
1
June, 2018
1
November, 2018
Available data
348
bigWig
331
bam
170
bed narrowPeak
165
fastq
138
tsv
96
tagAlign
73
zippedFastqFolder
30
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
csv
1
bed bed3
Organism
635
Homo sapiens
Biosample type
2655
tissue
635
primary cell
564
cell line
260
in vitro differentiated cells
9
stem cell
Organ
epithelium
338
pancreas
32
vasculature
28
kidney
27
blood vessel
25
connective tissue
20
vein
18
brain
12
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
264
AMP
199
T1D
172
HPAP
Genome assembly (visualization)
365
hg19
281
GRCh38
Lab
234
Kyle Gaulton, UCSD
229
AMP-T2D consortium
172
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
3D chromatin structure
audit.ERROR.category!
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
635 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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